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The Online Registry of Biomedical Informatics Tools (ORBIT) Project is a community-wide effort to create and maintain a structured, searchable metadata registry for informatics software, knowledge bases, data sets and design resources. This site is not a repository for the resources; it is a registry that provides links to the resources as submitted by the authors. To submit a resource, please login or register. Login is not required to search the repository.

 

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  • Carromex online catalog for Active Pharmaceutical IngredientsCategory: Machine AnnotatedCreated: 19 Jun 2020Name: Carromex online catalog for Active Pharmaceutical Ingre...Description: For each Active Pharmaceutical Ingredient we have listed the number of DNA and RNA targets obtained by our chemical space enumeration algorithm.  Not every Active Pharmaceutical Ingredient is listed in the catalog, we can provide formulas on request.  T ...
  • Pharma LeadsCategory: BioinformaticsCreated: 18 Jun 2020Name: Pharma LeadsDescription: Given a specific molecular formula existing systems like MOLGEN can enumerate the isomers for you. Pharma Leads enumerates molecular formulas out of a user defined space. It is database independent and fast, it is able to enumerate for small molecules to ...
  • NegAITCategory: NLP / Information ExtractionCreated: 21 Oct 2019Name: NegAITDescription: This application annotates English Text for Sentential, Morphological, and Double Negation. The input file is a text file, and the output file is in .xml format.  
  • ETUDECategory: SoftwareCreated: 21 Oct 2019Name: ETUDEDescription: ETUDE (Evaluation Tool for Unstructured Data and Extractions) is an open source NLP output evaluation tool flexible enough to score a range of documents with varied type systems and different evaluation criteria. ETUDE is comprised of two primary c ...
  • NLPReVizCategory: SoftwareCreated: 26 Feb 2018Name: NLPReVizDescription: NLPReViz is prototype tool to visualize and review the result of using NLP techniques to extract boolean variables from clinical text. Our tool combines multiple visualizations to help the users understand these results and make any necessary corrections ...
  • CLAMP - Clinical Language Annotation, Modeling and Processing toolkitCategory: SoftwareCreated: 6 Feb 2018Name: CLAMP - Clinical Language Annotation, Modeling and Proc...Description: CLAMP is a comprehensive clinical Natural Language Processing (NLP) software that enables recognition and automatic encoding of clinical information in narrative patient reports. It provides not only state-of-the-art NLP components but also a user-friendl ...
  • CliNERCategory: Named Entity RecognitionCreated: 12 Feb 2015Name: CliNERDescription: Open-source natural language processing system for named entity recognition in clinical text of electronic health records. CliNER will identify clinically-relevant entities mentioned in a clinical narrative (such as diseases/disorders, signs/symptoms, med ...
  • NDF-RT APICategory: BioinformaticsCreated: 29 Oct 2014Name: NDF-RT APIDescription: The NDF-RT API is a web service for accessing the current National Drug File - Reference Terminology (NDF-RT) data set from your program via SOAP/WSDL or through a RESTful interface.  The NDF-RT RESTful web API is a simple web service implemented using HT ...
  • RxNorm APICategory: BioinformaticsCreated: 29 Oct 2014Name: RxNorm APIDescription: The RxNorm API is a web service for accessing the current RxNorm data set from your program. Clients can access the web service via SOAP/WSDL or through a RESTful interface. RxNorm provides normalized names for clinical drugs and links its names to many o ...
  • RxNavCategory: BioinformaticsCreated: 29 Oct 2014Name: RxNavDescription: RxNav is a browser for several drug information sources, including RxNorm, RxTerms and NDF-RT. RxNav finds drugs in RxNorm from the names and codes in its constituent vocabularies. RxNav displays links from clinical drugs, both branded and generic, to the ...
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